The primary cause of the English Civil War (1642-1651) was the dissolution of Parliament by Charles I. This act and the subsequent conflicts over the power of the monarchy versus the rights of Parliament were pivotal in leading to the war.
While ongoing conflicts between Protestants and Catholics influenced the religious tensions of the time, the specific actions taken by Charles I, including the dissolution of Parliament and his attempts to govern without parliamentary consent, were significant triggers for the conflict.
The disagreements between Parliament and Oliver Cromwell arose later in the civil war, and the abolition of the Church of England was not a cause of the war itself but rather a result of the changes brought about during the conflict.
Thus, the most relevant answer in your list is the dissolution of Parliament by Charles I.