The primary reasons Thomas Hooker left the Massachusetts Bay Colony to found the Connecticut Colony include:
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He desired to move further inland where soil was better for farming. - This is correct; Hooker sought better agricultural opportunities.
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He thought the government had too much power. - This is also correct; Hooker was an advocate for more democratic governance and believed in the necessity of limiting government power.
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He was forced out by Native Americans. - This is not a correct reason for Hooker's departure. He was not forced out by Native Americans.
Therefore, the correct selections are 1 and 2.