The best evidence for the endosymbiotic theory among the options provided is:
Eukaryotic cells contain not only their own DNA, but some organelles contain their own unique DNA.
This supports the endosymbiotic theory, which suggests that certain organelles, specifically mitochondria and chloroplasts, originated from free-living prokaryotes that were engulfed by ancestral eukaryotic cells. The presence of unique DNA in these organelles, which is similar to bacterial DNA, provides significant evidence for this theory.