Part A: The most suitable explanation for how such different organisms could have the same subset of 1,000 genes is:
A. The subset of genes shared by humans and prokaryotes originates from a common ancestor and has been retained over billions of years of evolution.
This answer highlights the concept of common descent, where genes that are essential for fundamental cellular processes were inherited from a common ancestor and have been preserved through evolutionary processes because of their essential functions.
Part B: The sorts of functions that these shared genes might have are most likely:
A. regulation of DNA replication
C. coding for ribosomal RNA
These functions are fundamental to all forms of life, regardless of complexity. Regulation of DNA replication is crucial for maintaining the integrity of genetic material during cell division, while ribosomal RNA is essential for protein synthesis, a core cellular process present in both prokaryotic and eukaryotic cells.